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Thank you for your answer.
There is nothing important missing in the VCF output but there is not the same level of information as in the classic output. It's a pity to be unable to use this output because the variant base is missing.
Could please some of you tell me how many variants you get from the output of SomaticSniper in the case of paired samples?
I would like to see if I am in the classic range. I can be above since my patients are old so they have probably accumulate more somatic mutations. In another way, I work on leukemia and the rate of mutations is pretty low.
Thank you in advance
There is nothing important missing in the VCF output but there is not the same level of information as in the classic output. It's a pity to be unable to use this output because the variant base is missing.
Could please some of you tell me how many variants you get from the output of SomaticSniper in the case of paired samples?
I would like to see if I am in the classic range. I can be above since my patients are old so they have probably accumulate more somatic mutations. In another way, I work on leukemia and the rate of mutations is pretty low.
Thank you in advance
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