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  • empyrean
    Member
    • Sep 2010
    • 52

    #1

    Parse Web Blast Output

    I have installed NCBI wwwblast at our local server and blast is running absolutely fine. I wanted to refine the html output which the blast is showing. For example, while showing alignment description, i wanted to make the "Subjcet" as a hyperlink and guide it to show in gbrowse. Can anyone suggest me how to achieve this?

    For example, the default output is shown below.

    Code:
       >gb|FJ032364.1| hypothetical resistant gene, complete
               cds
              Length = 1905
    
     Score =  634 bits (320), Expect = e-179
     Identities = 320/320 (100%)
     Strand = Plus / Plus
    
    
    Query: 1   atgaatagtgtattgaatactggaagaactactatttgtgatgcgtataatgtagcggct 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 1   atgaatagtgtattgaatactggaagaactactatttgtgatgcgtataatgtagcggct 60
    I would like to see "Sbjct:" as a hyperlink created by me. I have the www libraries but dont know which one to change this.. Please some one suggest me

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