Max possible threads with Licensed novoalign

[arkal]

Hey,
Im using a licensed version of Novoalign... i wanted to know the maximum number of threads that Novo can handle per run(with 1 thread per core).... I run a rocks SGE with a suffficient number of cores.

The manual shows -c 99.. is that the default and can i increase it to whatever value i want?

Thanks in advance
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[nilshomer]

This looks like a repost of a previous question. Please do not repost.

[arkal]

Repost in the sense i moved my q from General to Bioinformatics only.. sry!

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[arkal]

Repost in the sense i moved my q from General to Bioinformatics only.. sry!

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[crazee]

Hey,
Im using a licensed version of Novoalign... i wanted to know the maximum number of threads that Novo can handle per run(with 1 thread per core).... I run a rocks SGE with a suffficient number of cores.

The manual shows -c 99.. is that the default and can i increase it to whatever value i want?

Thanks in advance
-A

Dont provide the -c option, novoalign will automatically detect and use all available cores

[arkal]

Hmm... thanks

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[crazee]

Hmm... thanks

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Also, I am currently running an alignment on 108 cores using novoalignCSMPI..if it helps.