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  • papori
    Senior Member
    • Dec 2010
    • 181

    #1

    merging 2 sam files

    Hi all,
    i was using BWA 0.5.9
    i was doing samse.
    i did samse for pair ends separately.
    first for first pair , next to the second pair.
    So , i am having now 2 files
    *_1.sam
    *_2.sam

    Can i merge it with samtools?
    If i will merge it with samtools , will the result be the same as i was doing sampe?
    I am not using sampe , because i have segmentation fault with sampe, but not with sampe.

    Thanks , Papori

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