Problems installing kisSNP

[boetsie]

Hi all,

I'm trying to install and run the kisSNP software.

I’ve downloaded and installed the kisSNP suite as explained at the kisSNP website, and I try to run the program with;

./kisSnp1.0/kisSnp_two_sets

However, I get the following error;
./kisSnp1.0/kisSnp_two_sets: error while loading shared libraries: libJudy.so.1: cannot open shared object file: No such file or directory

The libJudy.so.1 is present in my $PATH at ‘/usr/lib/libJudy.so.1’ and is also present in the kisSNP package.

I've asked the developer, but he is on holidays for two weeks, so in the meanwhile i try it here

Any thoughts?

Kind regards,
Boetsie

[pierre350d]

The libjudy location should be present in your "$LD_LIBRARY_PATH" and not only in your "$PATH".
You may overcome this problem with the following command: export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/libJudy.so.1