Any pointers for 4C-Seq analysis ?

[ParthavJailwala]

I am currently analyzing a 4C-seq dataset (circular chromosomal conformation capture followed by sequencing) and have a conceptual understanding of the experimental protocol and what the sequence reads should capture.

However, when I look for papers or articles discussing analysis of 4C-seq data, I dont find much out there.

I will really appreciate if any of the forum members conversant with 4C-Seq analysis would be interested to provide me pointers and/or provide input to several questions I have about the nature of the reads, restriction sites, FastQC report on the sequences etc.

Thanks

[ParthavJailwala]

An excellent review of current methods for chromosome conformation capture:

http://bfg.oxfordjournals.org/content/10/1/11.full

Thanks