exonsBy function in GenomicRanges package

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biofreak

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Join Date: Jun 2011

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#1

exonsBy function in GenomicRanges package

08-11-2011, 09:02 AM

Hi All,
I am working with canFam2 data. The commands used are:
canFamrefGene <- makeTranscriptDbFromBiomart(biomart="ensembl",dataset="cfamiliaris_gene_ensembl")
exonRangesList <- exonsBy(canFamrefGene, "gene")

the data is not sorted per chromosome in the exonRangesList object. This is later giving me problems with countOverlaps function.
Can someone please help.
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