alignment quality

madhu

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Join Date: Mar 2011

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alignment quality

08-16-2011, 10:04 AM

Hai

I used 2 different programs to align ChIP-seq raw data, against reference genome. I would like to compare the alignment quality. Now I have .sam and .bam files after alignment, sorting, indexing and unique reads processing. Please let me know, the possible ways to validate these aligned .bam/.sam files. I am very new to this topic. Please help me...

Thanks

Madhu
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