Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • NicoBxl
    not just another member
    • Aug 2010
    • 264

    align small reads on small sequences

    Hi,

    What is the best alignment tool to align small reads ( ~20 nt ) on small sequences (~20 nt too ).

    Thanks,

    N.
  • cedance
    Senior Member
    • Feb 2011
    • 108

    #2
    Isn't that basically (multiple) sequence alignment?

    Comment

    • NicoBxl
      not just another member
      • Aug 2010
      • 264

      #3
      Now I'm using blastn but it's very slow (I've about 1M sequences to align against a DB of 1M sequences )

      Comment

      Latest Articles

      Collapse

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, Yesterday, 11:58 AM
      0 responses
      10 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-05-2026, 10:09 AM
      0 responses
      25 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-04-2026, 08:59 AM
      0 responses
      35 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-02-2026, 12:03 PM
      0 responses
      58 views
      0 reactions
      Last Post SEQadmin2  
      Working...