Read Intensity Figure

[peterbengkui]

Hi All,

Sorry to bother you guys, but I'm begging for help on creating a kind of intensity figure (if i'm calling name right). Here is a sample figure. Please be so so kind to tell me what the figure is, and how to create. More specifically, what the vertical axis really is.

Thanks a million!

[volks]

which paper is this?

the figure shows the intensity of ChIP-seq datasets for different genes (y, sorted by P-value). x shows the genomic window +/-5kb of the transcription start site.

probably created in R and illustrator.

[peterbengkui]

Dear Volks,

thanks a lot for prompt reply. Here's the link of the paper. Do you think the heatmap function of R can do the job?

Thanks a lot!

Best,
Peter

http://www.ncbi.nlm.nih.gov/pubmed?t...20stem%20cells.