Hi,
I want to filter my BAM alignments (generated using BWA on paired-end Illumina reads) to retain only those read pairs where at least one of the reads of the pair has unique mapping. Is there a way of doing this using the tag information available in the SAM file? or does anyone know of a tool that does something on these lines? Any suggestion will be greatly appreciated.
Thanks in advance..
Guru.
I want to filter my BAM alignments (generated using BWA on paired-end Illumina reads) to retain only those read pairs where at least one of the reads of the pair has unique mapping. Is there a way of doing this using the tag information available in the SAM file? or does anyone know of a tool that does something on these lines? Any suggestion will be greatly appreciated.
Thanks in advance..
Guru.
Comment