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PileLine 1.2 released
PileLine 1.2 at http://sing.ei.uvigo.es/pileline/index.php/Main_Page
The major changes in this version are:
- pileline-nsmc:
Added two new parameters: -c (column to include when using -e), --ref-col and --allele-col for reference genome and alternative (allele) columns.
- pileline-fulljoin:
Support for different seq-col and pos-col for each input file via --seq-cols and --pos-cols
- pileline-fastjoin:
Bugfix. NullPointerException when using custom columns and the sequence or position are the last column.
Added new behaviour: The data of each joined file now corresponds to all columns but those of sequence and position.
- pileline-fastseek:
Bugfix. Hang when using a custom --seq-col
pileline-2smc, pileline-nsmc:
Added column names in output files as a comment.
- core:
Bugfix in tabix-based intervals index. Exception "Cannot getOverlappingIntervals with an iteration in progress" is thrown when getting overlapping intervals and getting only the first. This also produces that unit test didn't complete successfully.
The major changes in this version are:
- pileline-nsmc:
Added two new parameters: -c (column to include when using -e), --ref-col and --allele-col for reference genome and alternative (allele) columns.
- pileline-fulljoin:
Support for different seq-col and pos-col for each input file via --seq-cols and --pos-cols
- pileline-fastjoin:
Bugfix. NullPointerException when using custom columns and the sequence or position are the last column.
Added new behaviour: The data of each joined file now corresponds to all columns but those of sequence and position.
- pileline-fastseek:
Bugfix. Hang when using a custom --seq-col
pileline-2smc, pileline-nsmc:
Added column names in output files as a comment.
- core:
Bugfix in tabix-based intervals index. Exception "Cannot getOverlappingIntervals with an iteration in progress" is thrown when getting overlapping intervals and getting only the first. This also produces that unit test didn't complete successfully.