Please could anyone direct me to sources (ftp or otherwise) where I could find a number of FASTQ files pertaining to various organisms along with the links for the corresponding reference genome sequences?
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You can obtain sequences in fastq format from short sequence read archive at NCBI (http://www.ncbi.nlm.nih.gov/sra), GEO http://www.ncbi.nlm.nih.gov/geo/ (search for "high throughput sequencing"[Platform Technology Type]) or European nucleotide archive (http://www.ebi.ac.uk/ena/home). You can find the reference genomes at NCBI.Last edited by GenoMax; 09-09-2011, 03:34 AM.
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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