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  • Correct input file format for SLOPE?

    Wait, I figured it out. Sorry guys. I'd delete this thread if I could figure out how.
    Last edited by Heisman; 09-10-2011, 07:24 PM.

  • #2
    Can you post what sort of input files you used? I'm trying to use SLOPE now with a SAM file generated with SSAHA2 and while the program seems to run, there is no output in my 'matches' file.
    -Chris

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    • #3
      Actually, I had that same problem and gave up as it's not the most pertinent thing in the world. I'm aligning my data now to the whole genome and not just a targeted reference sequence so I'm not sure I can even use SLOPE at this point.

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