All right,
Here is my pipeline, some metrics and logs ...
Even after using a bed file from "SeqCap EZ Human Exome Library v2.0" i'm still getting 350191 variants ... Hope someone can help me to get to the promised 20k variants.![Confused](https://www.seqanswers.com/core/images/smilies/confused.png)
I'm planning to switch to GATK 1.2 on the next few weeks ...
Here is my pipeline, some metrics and logs ...
Even after using a bed file from "SeqCap EZ Human Exome Library v2.0" i'm still getting 350191 variants ... Hope someone can help me to get to the promised 20k variants.
![Confused](https://www.seqanswers.com/core/images/smilies/confused.png)
I'm planning to switch to GATK 1.2 on the next few weeks ...
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