Cufflinks deconvolution warnings and fpkm_tracking files

gavin.oliver

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Join Date: Jan 2010

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Cufflinks deconvolution warnings and fpkm_tracking files

09-15-2011, 01:59 AM

Hi all,

I am aware that deconvolution warnings in the isoforms.fpkm_tracking files generated by cufflinks mean the entry should be treated with suspicion/ignored.

However, am I correct in thinking that the FPKM value for the corresponding gene in the genes.fpkm_tracking file should still be safe to use, since the deconvolution is a transcript-level problem?

Thanks in advance.
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