Hi
In the 454 2.6 mapper version there is a .bam file created. How can it be viewed in ucsc or in other softwares?
In the 454 2.6 mapper version there is a .bam file created. How can it be viewed in ucsc or in other softwares?
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java -jar SortSam.jar SO=coordinate INPUT=454Contigs.bam OUTPUT=output.bam VALIDATION_STRINGENCY=LENIENT CREATE_INDEX=true
samtools sort example.bam example_sorted
samtools index example_sorted.bam
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