I am trying to simulate NGS illumina read data using ART simulator that was used for 1000 genome projects. (http://www.niehs.nih.gov/research/re.../art/index.cfm)
It works great for generating simulated read data and alignment information for each simulated read.
Unlike other simulators such as dwgsim, MAQ simulate, and etc, it does not provide a list of simulated SNPs (usually, in a format of "chrosome# reference_position reference_base simulated_base".
I am wondering if anyone can explain how exactly I can extract a list of simulate SNPs.
Thank you very much in advance!
All the best,
yhong
It works great for generating simulated read data and alignment information for each simulated read.
Unlike other simulators such as dwgsim, MAQ simulate, and etc, it does not provide a list of simulated SNPs (usually, in a format of "chrosome# reference_position reference_base simulated_base".
I am wondering if anyone can explain how exactly I can extract a list of simulate SNPs.
Thank you very much in advance!
All the best,
yhong
