Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • hinsby
    Junior Member
    • Apr 2009
    • 4

    #1

    newbler installation in Fedora10

    Hello all,

    I am new to newbler and I am trying to install it in a virtual (Vmware) partition in my Mac machine. Question is does newbler runs in Fedora10? I installed the several packages that come along newbler and run the GUI of gsAssembler but when executing a project assembly it gives the report that can non execute the several binaries including "createproject" or newbler. I went and checked these files in the bin folder and they have the executable permissions active. any suggestions of what to do?
  • joscarhuguet
    Member
    • Feb 2010
    • 18

    #2
    Newbler

    Originally posted by hinsby View Post
    Hello all,

    I am new to newbler and I am trying to install it in a virtual (Vmware) partition in my Mac machine. Question is does newbler runs in Fedora10? I installed the several packages that come along newbler and run the GUI of gsAssembler but when executing a project assembly it gives the report that can non execute the several binaries including "createproject" or newbler. I went and checked these files in the bin folder and they have the executable permissions active. any suggestions of what to do?
    Hey Hinsby,
    perhaps you could get some hints here:
    http://biostar.stackexchange.com/que...ler-and-ubuntu

    If you are trying to assembly 454 maybe you could try MIRA. It works for me and runs in many linux and mac versions.

    Comment

    • Bruins
      Member
      • Feb 2010
      • 78

      #3
      Originally posted by hinsby View Post
      Question is does newbler runs in Fedora10?
      Fedora 10 is no longer maintained (11 and 12 are EOL as well and 13 will follow in May one month after the release of 15). I suggest switching to Fedora 14 as soon as possible (15 will be ready in May). It is very much possible that this solves your Newbler problems

      If that doesn't solve it, please post the full error message.

      Comment

      • kmcarr
        Senior Member
        • May 2008
        • 1181

        #4
        Originally posted by Bruins View Post
        Fedora 10 is no longer maintained...
        I believe it was two years ago when hinsby posted the question.

        Comment

        Latest Articles

        Collapse

        • kinpict.com
          Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
          by kinpict.com
          The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
          Today, 06:37 PM
        • SEQadmin2
          16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
          by SEQadmin2





          NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
          10-30-2026, 06:46 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, 11-12-2026, 07:59 AM
        0 responses
        27 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 11-05-2026, 09:25 AM
        0 responses
        35 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 11-03-2026, 11:54 AM
        2 responses
        56 views
        0 reactions
        Last Post kinpict.com  
        Started by SEQadmin2, 10-28-2026, 09:57 AM
        0 responses
        175 views
        0 reactions
        Last Post SEQadmin2  
        Working...