Chromosome distribution of RNA seq data

[lintianfeng]

Hi everybody,

I'm recently dealing with RNA seq data, and I'm trying to make a distribution across the whole genome, using different color bars to stand for different level of expression, eg. 0-2 yellow, 2-5 green, 5-10 red...

Does anyone have an idea how to make this type of picture? Thanks so much!

[ttnguyen]

IGV (http://www.broadinstitute.org/igv/) is very helpful for genome-wide visualization. Probably heatmap of IGV can help you...