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  • #31
    Astalavista

    Hi,

    Why dont you use the online version

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    • #32
      Originally posted by paulorapazote View Post
      Hi,

      Why dont you use the online version

      http://genome.crg.es/astalavista/

      I got 100 samples to analyse so it would be useful and efficient if I can run it on server. I can process using the command line but the output of astalavista was in binary which I can't open it. Would you have any idea?

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      • #33
        Sorry, I never worked with the command line. I briefly checked the 2.2 version and command is

        ./astalavista.sh -c asta -i <input GTF> -o <output file>

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        • #34
          Originally posted by paulorapazote View Post
          Sorry, I never worked with the command line. I briefly checked the 2.2 version and command is

          ./astalavista.sh -c asta -i <input GTF> -o <output file>

          The problem was the output file is a binary file. There was no command to specify the output. I tried the webserver as you suggest but end up no result page after they finished processing my GTF file. I contacted the admin and webmaster but no answer yet from them.

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