DNA Alignmet Algorithms- Online Alignment Tools

[kursuni]

Hello,

I'm working on my thesis and it is about the comparison of DNA Alignment Algorithms. I need to find websites that has software running these Alignment algorithms.
Would you suggest Online Alignment Software that I can reach ?

Thank you in advance..

[maasha]

Bob Edgar who wrote Muscle did a lot of benchmarking. Its somewhere on his website or blog -> http://drive5.com/

[mbblack]

T-coffee is available on several servers

http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html

I have not used them in years, but CLUSTALW servers should be available at the Pasteur Inst., EMBL, and likely others as well.