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  • intregen
    replied
    Originally posted by schaffer View Post
    Hi,
    I install bedtools and invoke
    ./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
    Lana
    What genome file is that? I have ChIP-seq data that I'm trying to visualize in Bedgraph format. I tried using the human.hg19.genome provided by bedtools as my genome file but got the error: The requested genome file (human.hg19.genome) could not be opened.

    Leave a comment:


  • baptist
    replied
    This command solved my problem.

    Originally posted by schaffer View Post
    Hi,
    I install bedtools and invoke
    ./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
    Lana

    Leave a comment:


  • schaffer
    replied
    Hi,
    I install bedtools and invoke
    ./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
    Lana

    Leave a comment:


  • oyvindbusk
    replied
    Hi,
    Maybe this helps : http://groups.google.com/group/bedto...3754383fbe24b7

    Leave a comment:


  • ayushraman
    started a topic Bed to BedGraph

    Bed to BedGraph

    Hi everyone..

    I am interested in converting the bed file to bedgraph file. Any help or advice will be highly appreciated.

    Thanks

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