Bed to BedGraph

[ayushraman]

Hi everyone..

I am interested in converting the bed file to bedgraph file. Any help or advice will be highly appreciated.

Thanks

[oyvindbusk]

Hi,
Maybe this helps : http://groups.google.com/group/bedto...3754383fbe24b7

-Ø

[schaffer]

Hi,
I install bedtools and invoke
./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
Lana

[baptist]

This command solved my problem.

Hi,
I install bedtools and invoke
./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
Lana

[intregen]

Hi,
I install bedtools and invoke
./genomeCoverageBed -bg -trackline -trackopts name=${new} -i $file -g sizeMouse.txt > ${new}.bedgraph
Lana

What genome file is that? I have ChIP-seq data that I'm trying to visualize in Bedgraph format. I tried using the human.hg19.genome provided by bedtools as my genome file but got the error: The requested genome file (human.hg19.genome) could not be opened.