Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • changes to SAM Specs (Sept 7, 2011)

    I recently noticed that the SAM specifications have been updated (September 7, 2011). It would be nice if they listed the differences between versions of the specs and announced changes but I haven't been able to find such a listing. What I ended up doing was converting the pdf to text (via pdftotext) of the recent version and an older version (April 17) and finding the differences that way.

    Two main things I noticed - they changed the term "fragment" to "segment" throughout the file. I think this is great since it will help to cut down on confusion with other meanings of the word fragment. I also noticed they added a Barcode (BC) tag.

    Another minor thing: the flow signal intensities tag (FZ) is now stored as a byte array of uint16_t instead of a byte array in hex format.

  • #2
    You can track the changes to the TEX file used to create the PDf in the samtools SVN repository, but I agree having a human readable summary in the document would be nice.

    Comment


    • #3
      You can track the changes to the TEX file used to create the PDf in the samtools SVN repository
      Thanks, that is good to know. =justin

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Recent Advances in Sequencing Analysis Tools
        by seqadmin


        The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
        Yesterday, 07:48 AM
      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 06:57 AM
      0 responses
      4 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 07:17 AM
      0 responses
      13 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 05-02-2024, 08:06 AM
      0 responses
      19 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-30-2024, 12:17 PM
      0 responses
      20 views
      0 likes
      Last Post seqadmin  
      Working...
      X