Annotating FASTA sequence

[gokhulkrishnakilaru]

Hi,

Could anybody kindly let me know how to annotate a chicken FASTA sequence using UCSC annotation tracks?

Thanks in advance

[dpryan]

Wouldn't it be easier to just download their annotation files, or am I misunderstanding?

[gokhulkrishnakilaru]

I have downloaded the annotation tracks.

Now, the point is you have to annotate my input FASTA file with the information from the annotation tracks.

Do you have any other ideas?

[vamosia]

IGV should give you something similar.

It doesn't quite annotate the genome, but it will give you corresponding information where annotation information is available on a different track.