Hello all,
I trying to run GATK RealignerTargetCreator prior to the IndelRealigner.
The RealignerTargetCreator takes as the -I parameter a sample BAM file. Does anybody know what does the sample BAM file is for? Can I use a generic file for all the analyses?
any help will be apprecited.
Thanks
Jorge
I trying to run GATK RealignerTargetCreator prior to the IndelRealigner.
The RealignerTargetCreator takes as the -I parameter a sample BAM file. Does anybody know what does the sample BAM file is for? Can I use a generic file for all the analyses?
any help will be apprecited.
Thanks
Jorge
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