chip-seq analysis against E.coli

[tujchl]

hi:

I just do chip-seq analysis against E.coli genome, and want to visualize it on IGV. For E.coli just has "one chr", how do I generate bed or wig file related to chromosome?

[Morgane_AUS]

Hi,

did you manage to do what you were attempting ? Im trying to do the same thing but I'm stuck. Any help would be appreciated.

Morgane

[tujchl]

you can upload your own genome sequence (usually fasta format) into IGV and visualize your outcome. you can upload your genome file via genome->upload genome from file

[blancha]

To view the E. coli genome in IGV, you just pick E. coli in the list of genomes.
There are two strains currently available on the IGV server.

If you want to view a reference genome different from the two strains available, you can upload your own FASTA file.

https://www.broadinstitute.org/igv/LoadGenome