gff to zff format

[parulvk]

Hello,

We need to convert the gene strcture file from gff to zff format. Are there any programs to do so?

I have tried the maker2zff.pl script included in maker package as well as
another script found at
http://iubio.bio.indiana.edu/gmod/ge...ge/gff2zff2.pl. However
both the scripts have been generating empty files without any error
messages.

Thanks,
PK

[Wallysb01]

Hi PK,

Did you ever figure something out for this. I'm trying to do the same thing and found that same script, and of course got the same errors.

[mcastro]

Hi!
I have also the same problem. Someone fixed this error?

Thanks

[Wallysb01]

I ultimately used the maker2zff script that is part of the Maker package.

[asperjelly]

Has anybody found a solution for this? I'm trying to use the maker2zff in the maker distribution but I'm also getting empty genome.ann and genome.dna files.
Thanks,
Jon

[Votinhkiem90]

Has anybody found a solution for this? I'm trying to use the maker2zff in the maker distribution but I'm also getting empty genome.ann and genome.dna files.
Thanks,
Jon

I have a same problem, any suggest for our.

[Votinhkiem90]

I have a same problem, any suggest for our.

This problem has solved, I ultimated "maker2zff" in the Maker package with -n option (without filtering) and it worked ok.