A Problem of BFAST with Open Tmp GZFile

[matrix731]

Hi, I have a weird problem with the bfast match step on CentOS 5.5, when I tried the following command:

bfast mathch -f ucsc_hg19.fasta -r 17915_L1_1.fq -T /ifs2/user/bfast/tmp/

and got this error:

************************************************************
Reading 17915_L1_1.fq.gz into a temp file.
************************************************************
In function "OpenTmpGZFile": Fatal Error[OpenFileError]. Variable/Value: /ifs2/user/bfast/tmp/.bfast.tmp.A2mYup.
Message: Could not open temporary file.
The file stream error was:: No such file or directory
***** Exiting due to errors *****
************************************************************

We use the latest version of bfast(0.6.5a), and the commands to creat index are as follow:

bfast fasta2brg -f ucsc_hg19.fasta -A 0
bfast index -f ucsc_hg19.fasta -m 1111111111111111111111 -w 14 -i 1 -A 0 -t

It is not about the writing rights since I changed the direction to full wrinting permissions(777), nor about the space of the filesystem. I entered the temporary direction, no file has been created.

Is there anyone faced the same problem and found a solution?
Thanks in advance!

[nilshomer]

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