Hi, I have a weird problem with the bfast match step on CentOS 5.5, when I tried the following command:
bfast mathch -f ucsc_hg19.fasta -r 17915_L1_1.fq -T /ifs2/user/bfast/tmp/
and got this error:
************************************************************
Reading 17915_L1_1.fq.gz into a temp file.
************************************************************
In function "OpenTmpGZFile": Fatal Error[OpenFileError]. Variable/Value: /ifs2/user/bfast/tmp/.bfast.tmp.A2mYup.
Message: Could not open temporary file.
The file stream error was:: No such file or directory
***** Exiting due to errors *****
************************************************************
We use the latest version of bfast(0.6.5a), and the commands to creat index are as follow:
bfast fasta2brg -f ucsc_hg19.fasta -A 0
bfast index -f ucsc_hg19.fasta -m 1111111111111111111111 -w 14 -i 1 -A 0 -t
It is not about the writing rights since I changed the direction to full wrinting permissions(777), nor about the space of the filesystem. I entered the temporary direction, no file has been created.
Is there anyone faced the same problem and found a solution?
Thanks in advance!
bfast mathch -f ucsc_hg19.fasta -r 17915_L1_1.fq -T /ifs2/user/bfast/tmp/
and got this error:
************************************************************
Reading 17915_L1_1.fq.gz into a temp file.
************************************************************
In function "OpenTmpGZFile": Fatal Error[OpenFileError]. Variable/Value: /ifs2/user/bfast/tmp/.bfast.tmp.A2mYup.
Message: Could not open temporary file.
The file stream error was:: No such file or directory
***** Exiting due to errors *****
************************************************************
We use the latest version of bfast(0.6.5a), and the commands to creat index are as follow:
bfast fasta2brg -f ucsc_hg19.fasta -A 0
bfast index -f ucsc_hg19.fasta -m 1111111111111111111111 -w 14 -i 1 -A 0 -t
It is not about the writing rights since I changed the direction to full wrinting permissions(777), nor about the space of the filesystem. I entered the temporary direction, no file has been created.
Is there anyone faced the same problem and found a solution?
Thanks in advance!
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