Is it right, that the -n option of "bwa align" is restricted to only one of the paired-end reads?
I """think""" that I have found the fact that, when I give -n option, the option is set to only one of the reads.
Does anybody know how to set -n option to both of the reads?
I think the problem rises when I use "bwa sampe" to pair reads; bwa probably pairs without regarding the previous options given in "bwa aln", such as the -n option I mentioned.
I """think""" that I have found the fact that, when I give -n option, the option is set to only one of the reads.
Does anybody know how to set -n option to both of the reads?
I think the problem rises when I use "bwa sampe" to pair reads; bwa probably pairs without regarding the previous options given in "bwa aln", such as the -n option I mentioned.
Comment