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  • rworthi
    Member
    • May 2011
    • 14
    #1

    installing birdsuite

    Has anyone been able to install the Broad's birdsuite on Ubuntu or CentOS?

    I tried on Ubuntu 10.04 LTS 64-bit. First, the broadgap.* files would not install at step 5, and Broad support sent me new files compatible with newer versions of R.

    But then install of the MCRInstaller.75.glnxa64.bin failed at step 6. They have no fix because their matlab programmer moved on.

    Any ideas?
    Professor of Pharmaceutical Sciences at Southern Illinois University. Subject of the Personal Genomes Project with CGI genome sequencing, funded by a university seed grant. Annotated human and mouse genomes at the Washington University (St. Louis) GSC during Bob Waterston's tenure. Worked in nematode gene discovery at Divergence, Inc. Recent NSF grant in yeast recombinant genetics. Teach pharmacogenomics, human genomics and pharmaceutical biotechnology.
    Tags: None
    • minikuma
      Junior Member
      • Nov 2011
      • 2
      #2
      please check this post,http://geneticsnote.blogspot.com/201...ittle-bit.html
      Last edited by minikuma; 12-09-2011, 05:06 AM.

        Comment

        • rworthi
          Member
          • May 2011
          • 14
          #3
          this is a huge contribution! Thanks so much!

          I have been able to make it work in Debian, but not CentOS or Ubuntu, so this really helps.

          Also, I have a VM image at bionimbus that works:

          IMAGE emi-D23714BF bird_bucket/Broad-birdsuite-1-5-5.img.manifest.xml rworth available public x86_64 machine instance-store
          Professor of Pharmaceutical Sciences at Southern Illinois University. Subject of the Personal Genomes Project with CGI genome sequencing, funded by a university seed grant. Annotated human and mouse genomes at the Washington University (St. Louis) GSC during Bob Waterston's tenure. Worked in nematode gene discovery at Divergence, Inc. Recent NSF grant in yeast recombinant genetics. Teach pharmacogenomics, human genomics and pharmaceutical biotechnology.

            Comment

            • minikuma
              Junior Member
              • Nov 2011
              • 2
              #4
              A VM image is great ! I did not know the bionimbus, I will try it out in Amazon AWS.

              Originally posted by rworthi View Post
              this is a huge contribution! Thanks so much!

              I have been able to make it work in Debian, but not CentOS or Ubuntu, so this really helps.

              Also, I have a VM image at bionimbus that works:

              IMAGE emi-D23714BF bird_bucket/Broad-birdsuite-1-5-5.img.manifest.xml rworth available public x86_64 machine instance-store
              Last edited by minikuma; 12-03-2011, 03:56 AM.

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