Seqanswers Leaderboard Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • rworthi
    Member
    • May 2011
    • 14
    #1

    installing birdsuite

    Has anyone been able to install the Broad's birdsuite on Ubuntu or CentOS?

    I tried on Ubuntu 10.04 LTS 64-bit. First, the broadgap.* files would not install at step 5, and Broad support sent me new files compatible with newer versions of R.

    But then install of the MCRInstaller.75.glnxa64.bin failed at step 6. They have no fix because their matlab programmer moved on.

    Any ideas?
    Professor of Pharmaceutical Sciences at Southern Illinois University. Subject of the Personal Genomes Project with CGI genome sequencing, funded by a university seed grant. Annotated human and mouse genomes at the Washington University (St. Louis) GSC during Bob Waterston's tenure. Worked in nematode gene discovery at Divergence, Inc. Recent NSF grant in yeast recombinant genetics. Teach pharmacogenomics, human genomics and pharmaceutical biotechnology.
    Tags: None
  • minikuma
    Junior Member
    • Nov 2011
    • 2
    #2
    please check this post,http://geneticsnote.blogspot.com/201...ittle-bit.html
    Last edited by minikuma; 12-09-2011, 05:06 AM.

    Comment

    • rworthi
      Member
      • May 2011
      • 14
      #3
      this is a huge contribution! Thanks so much!

      I have been able to make it work in Debian, but not CentOS or Ubuntu, so this really helps.

      Also, I have a VM image at bionimbus that works:

      IMAGE emi-D23714BF bird_bucket/Broad-birdsuite-1-5-5.img.manifest.xml rworth available public x86_64 machine instance-store
      Professor of Pharmaceutical Sciences at Southern Illinois University. Subject of the Personal Genomes Project with CGI genome sequencing, funded by a university seed grant. Annotated human and mouse genomes at the Washington University (St. Louis) GSC during Bob Waterston's tenure. Worked in nematode gene discovery at Divergence, Inc. Recent NSF grant in yeast recombinant genetics. Teach pharmacogenomics, human genomics and pharmaceutical biotechnology.

      Comment

      • minikuma
        Junior Member
        • Nov 2011
        • 2
        #4
        A VM image is great ! I did not know the bionimbus, I will try it out in Amazon AWS.

        Originally posted by rworthi View Post
        this is a huge contribution! Thanks so much!

        I have been able to make it work in Debian, but not CentOS or Ubuntu, so this really helps.

        Also, I have a VM image at bionimbus that works:

        IMAGE emi-D23714BF bird_bucket/Broad-birdsuite-1-5-5.img.manifest.xml rworth available public x86_64 machine instance-store
        Last edited by minikuma; 12-03-2011, 03:56 AM.

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • seqadmin
          Pathogen Surveillance with Advanced Genomic Tools
          by seqadmin




          The COVID-19 pandemic highlighted the need for proactive pathogen surveillance systems. As ongoing threats like avian influenza and newly emerging infections continue to pose risks, researchers are working to improve how quickly and accurately pathogens can be identified and tracked. In a recent SEQanswers webinar, two experts discussed how next-generation sequencing (NGS) and machine learning are shaping efforts to monitor viral variation and trace the origins of infectious...
          03-24-2025, 11:48 AM
        • seqadmin
          New Genomics Tools and Methods Shared at AGBT 2025
          by seqadmin


          This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.

          The Headliner
          The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...
          03-03-2025, 01:39 PM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        AI Tool Creates High-Resolution 3D Maps of the Mouse Brain by seqadmin
        Started by seqadmin, 03-20-2025, 05:03 AM
        0 responses
        41 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-20-2025, 05:03 AM  
        Studying Microbial Gene Transfer with RNA Barcoding by seqadmin
        Started by seqadmin, 03-19-2025, 07:27 AM
        0 responses
        49 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-19-2025, 07:27 AM  
        Mapping the snoRNAome in Zebrafish to Advance Disease Research by seqadmin
        Started by seqadmin, 03-18-2025, 12:50 PM
        0 responses
        36 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-18-2025, 12:50 PM  
        TIGR Systems Offer a Compact Alternative to CRISPR for Gene Editing by seqadmin
        Started by seqadmin, 03-03-2025, 01:15 PM
        0 responses
        192 views
        0 reactions
        		 Last Post seqadmin
        by seqadmin
        03-03-2025, 01:15 PM  
        View All
        Working...