Hello,
does anyone has a Perl script to convert BAM to BED format?
Thanks!
does anyone has a Perl script to convert BAM to BED format?
Thanks!
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Better to use BEDTools bamTobed utility -
See this thread for a previous discussion: http://seqanswers.com/forums/showthread.php?t=3574
Please note the command line bam2bed (using samtools and awk) suggested and the link to Heng Li's bam2bed which might provide the answers you need without actually having to crank up the perl interpreter.Comment
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hi any can tell me that how i convert PED file of HD SNP (777,960) data into TNT formate?Comment
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