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  • lewewoo
    Member
    • Apr 2011
    • 60

    #1

    GFF to GTF, and GTF to GRanges objects

    1) how to transfer GFF to GTF; human genome;

    2) how to make GRanges objects using GTF files.

    Thanks a lot!
  • Zigster
    Jeremy Leipzig
    • May 2009
    • 117

    #2
    you can go from GFF to GRanges without stopping at GTF
    Code:
    gffRangedData<-import.gff("myFile.gff)
    myGranges<-as(gffRangedData, "GRanges")
    --
    Jeremy Leipzig
    Bioinformatics Programmer
    --
    My blog
    Twitter

    Comment

    • lewewoo
      Member
      • Apr 2011
      • 60

      #3
      Thanks!
      Just double check the packages are:
      GenomicRanges
      rtracklayer

      Comment

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