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shazi828

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Join Date: Nov 2011

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exon-exon junction

11-17-2011, 08:18 AM

Hello Guys,

What are available tools for finding exon-exon splice junctions for 36bp size reads ? Tophat does not really have full support for reads <= 75bp apart from GT-AG introns. Any suggestions ?

thanks loads in advance.
Tags: 36bp reads, rna-seq, tophat

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