Why is PERL matching not efficient. Loading a variable number of delimited elements into an array is just the kind of thing PERL was designed for...
Other than writing your own scripts, you might try:
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Extract Infor from 1000G VCF files
I wonder if anyone can teach me a simple way to extract specific information (e.g. "LCSNP', 'LDAF', etc) of the variants from 1000 genome variant 2011 Oct release? The 'INFO' field is compressed in one single column, consisting of non-constant number of terms separated by semicolon ";". Perl matching is not efficient at all.
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Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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