Why is PERL matching not efficient. Loading a variable number of delimited elements into an array is just the kind of thing PERL was designed for...
Other than writing your own scripts, you might try:
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Extract Infor from 1000G VCF files
I wonder if anyone can teach me a simple way to extract specific information (e.g. "LCSNP', 'LDAF', etc) of the variants from 1000 genome variant 2011 Oct release? The 'INFO' field is compressed in one single column, consisting of non-constant number of terms separated by semicolon ";". Perl matching is not efficient at all.
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM
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