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  • adaptivegenome
    replied
    Why is PERL matching not efficient. Loading a variable number of delimited elements into an array is just the kind of thing PERL was designed for...

    Other than writing your own scripts, you might try:

    Leave a comment:


  • liu_xt005
    started a topic Extract Infor from 1000G VCF files

    Extract Infor from 1000G VCF files

    I wonder if anyone can teach me a simple way to extract specific information (e.g. "LCSNP', 'LDAF', etc) of the variants from 1000 genome variant 2011 Oct release? The 'INFO' field is compressed in one single column, consisting of non-constant number of terms separated by semicolon ";". Perl matching is not efficient at all.

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  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM

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