Why is PERL matching not efficient. Loading a variable number of delimited elements into an array is just the kind of thing PERL was designed for...
Other than writing your own scripts, you might try:
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Extract Infor from 1000G VCF files
I wonder if anyone can teach me a simple way to extract specific information (e.g. "LCSNP', 'LDAF', etc) of the variants from 1000 genome variant 2011 Oct release? The 'INFO' field is compressed in one single column, consisting of non-constant number of terms separated by semicolon ";". Perl matching is not efficient at all.
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This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.
The Headliner
The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...03-03-2025, 01:39 PM -
The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...02-24-2025, 06:31 AM
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