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GlimmerHMM takes a single sequence as input. Is any one aware of a wrapper script that can run glimmerHMM over entire genome.
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The Perl script: glimmhmm.pl will do it. -
Thanks ckuanglim! glimmhmm.pl script did the work.Comment
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Hey I am working on Glimmerhmm right now. Can you tell me how you handled the config.file? and what parameters you had in config.file? I am getting an error as "Decision tree file cannot be opened" during run time(Glimmerhmm). Can you tell me where I am going wrong? ThanksComment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM -
With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.
Introduction
Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM
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