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Has anyone worked with ERANGE (from Wold lab). I need to run it to compare with my algorithm. I am running it on human genome using RefSeq annotations.
The documentation for the program is not well organized and so does the code.
I have generated rds files from BLAT mappings so as I understand, I don't need to create expanded genome.
I was also able to generate .cis file for the reference annotations. Now in order to run the pipeline script for RNA-Seq analysis do I need to prepare anything out of the reference genome?
I tried to run the pipeline just by using rds file and model *.cis" file but it gives me error saying "gene_info.db" not found. I don't have any clue what that means.
Unfortunately they don't have any tutorial on their website (but they promised in the manual that they would) and even the contact page is also removed.
I would really appreciate some input from the users/developers.
Thanks.
The documentation for the program is not well organized and so does the code.
I have generated rds files from BLAT mappings so as I understand, I don't need to create expanded genome.
I was also able to generate .cis file for the reference annotations. Now in order to run the pipeline script for RNA-Seq analysis do I need to prepare anything out of the reference genome?
I tried to run the pipeline just by using rds file and model *.cis" file but it gives me error saying "gene_info.db" not found. I don't have any clue what that means.
Unfortunately they don't have any tutorial on their website (but they promised in the manual that they would) and even the contact page is also removed.
I would really appreciate some input from the users/developers.
Thanks.