Anyone knows how to get the CDS position of each gene, on HG18?
Note that it is for each gene, instead of each transcript
Note that it is for each gene, instead of each transcript
-
-
gene expression is equal to CDS of transcript. You need to see information of each transcript of gene.Originally posted by ahli1981 View Post -
You should be able to get them from the UCSD Genomes browser tables (http://genome.ucsc.edu/cgi-bin/hgTables?command=start).
Alternatively, you can extract the information from the annotations available at the NCBI FTP (ftp://ftp.ncbi.nih.gov/genomes/H_sap...romosomes/gbs/). I should note that those annotations are not for the HG18 version, but the latest release.Comment
-
thanks robsComment
-
NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Today, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
Comment