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  • GLEAN-gene

    It would be helpful if the community could kindly share documentation/resources to run GLEAN-gene
    Download GLEAN for free. GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

    Also could you please elaborate on the fields in "param.yaml" parameter file in
    YAML format
    Thanks!

  • #2
    How to use Glean_gene

    Hi,there,

    I also confused in using Glean-gene. The content of Readme file is so "Brevity",

    It will be appreciated if anyone gave me more information on how to use it.

    Best Regards!

    Comment


    • #3
      Hi there to,

      i`am having also much problems getting GLEAN started. I don`t get the README file...
      Is there any documentation out there which explains who GLEAN works?
      Does it the geneprediction itselves and then combines everything, or do I have to input the geneprediction-outputfiles to GLEAN. Why is there a database necessary? Or is this the part where I have to give my predcition-output?!?! I really dont get it

      THANKS a lot!

      Comment


      • #4
        GLEAN gene prediction tool was first published in the Honey Bee genome paper in Genome Biology: http://genomebiology.com/2007/8/1/R13

        You should email Aaron Mackey by using the "send message" link on this page: http://sourceforge.net/users/amackey

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