annotated genome

[ssingh]

How I can download annotated genomes of different species from ensembl. Please let me know.

[Bukowski]

http://www.ensembl.org/info/data/ftp/index.html

Second hit on Google for "ensembl annotated genome downloads"

[pmiguel]

http://www.ensembl.org/info/data/ftp/index.html

Second hit on Google for "ensembl annotated genome downloads"

I think as you had all of those words in your question, it rather looks like you bothered to post to SeqAnswers first, rather than taking the time to use Google. Shame on you.

Wow Bukowski, I would accuse you of being a zoopremist but your focus is quite a bit more narrow than that. There are only a couple of species featured in the link you give that are non-mammals.

Hey, ssingh, if your worldview extends beyond vertebrates, you could look here:

http://www.ensembl.org/info/about/species.html

Zoopremists will feel comfortable using this link as well. Animals are the main focus. The "lesser" kingdoms are relegated to links at the bottom of the page.

For those with stronger stomachs, here are the direct links to non-vertebrate animal ensemble download pages:

Other metazoa:

http://metazoa.ensembl.org/info/data/ftp/index.html

Plants:

http://plants.ensembl.org/info/data/ftp/index.html

Fungi:

http://fungi.ensembl.org/info/data/ftp/index.html

Protists:

http://protists.ensembl.org/info/data/ftp/index.html

Bacteria:

http://bacteria.ensembl.org/info/data/ftp/index.html

--
Phillip

[ssingh]

using biomart

How I can download annotated genome using biomart?