RNA-seq analysis

[chip_seq]

Hi All,

I'm new to RNA-seq analysis,I've RNA-seq data for different time points (time course experiment) and i would like to analyze it to get differentially expressed genes,i have table with counts for each gene at each time point,what is the most suitable tool or R package to use for getting differentially expressed genes??

Thank you in advance

[tir_al]

In Bioconductor the most highly used packages are DESeq and EdgeR.