Trying to use SRA; don't want to download entire sra files (fastq), just sampling. Some filter strings work; others don't. Can't get an answer as to how to encode strings other than they are 2 or 4 bit encoded...anyone know how to specify, for example, "CACG[anything]N" where N is really the basecall?
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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