Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Database of tumor-normal reads

    Hi everybody,
    I've just started to work on cancer genomic (using ngs) and I would like to test some tools. Unfortunately right now I don't have any available reads.
    Anyone knows where I can find some tumor-normal reads.
    Thanks in advance.

  • #2
    Look up TCGA...

    Comment


    • #3
      Hi All,

      We've included TCGA gene-level read counts as part of freely available reference library of genomics data in our product, GenePool. These counts were generated using the RNASeqV2 pipeline that leveraged RSEM. We've also taken the time to extract and curate the sample-level metadata and make it easily available to researchers to subset the samples, and analyze the data accordingly. For more advanced users, you can easily just export out the read counts and sample level metadata and get into more high-powered statistical analyses.

      Incidentally, we've also included the isoform-, splice junction-, and exon-level counts into GenePool's premium content.

      If you're interested in learning more, please check out GenePool's growing genomics library, check out the following threads:

      Registered SEQanswers sponsors/vendors can post commercial content here. Please support our sponsors!

      Registered SEQanswers sponsors/vendors can post commercial content here. Please support our sponsors!


      We'd love to have your feedback on this effort.

      ------------------------------
      GenePool is making genomics data management, analysis, and sharing easier!
      Products @ www.stationxinc.com
      Last edited by GenePool; 11-23-2014, 10:01 PM.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        The Impact of AI in Genomic Medicine
        by seqadmin



        Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
        02-26-2024, 02:07 PM
      • seqadmin
        Multiomics Techniques Advancing Disease Research
        by seqadmin


        New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

        A major leap in the field has
        ...
        02-08-2024, 06:33 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 06:12 AM
      0 responses
      17 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-23-2024, 04:11 PM
      0 responses
      67 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-21-2024, 08:52 AM
      0 responses
      73 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 02-20-2024, 08:57 AM
      0 responses
      62 views
      0 likes
      Last Post seqadmin  
      Working...
      X