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  • samtools mpileup error

    Hi all,

    i am trying to call snp's using mpileup command in samtools and i got the following error, could anyone give your suggestions to fix this!!


    incorrect number of fields (4 != 5) at 4:53820987

  • #2
    The usual answer is that your .bam file is truncated.

    Comment


    • #3
      so should i regenerate the file. But, with this file i have generated output using mpileup when i did for the first time, for some reason it showed this error when using it for the second time.

      Comment


      • #4
        Originally posted by meher View Post
        Hi all,

        i am trying to call snp's using mpileup command in samtools and i got the following error, could anyone give your suggestions to fix this!!


        incorrect number of fields (4 != 5) at 4:53820987
        Hello Meher

        I am also getting a similar problem using the mpile up, have you sorted out this problem?

        Regards

        Comment

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