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  • How to quickly obtain coverage per every bp in a genome ?

    I am looking for an output in tab del txt or csv ? I already have aligned bam files. Hope to hear from anyone : )

  • #2
    samtools provides an easy way do it.
    Code:
    samtools depth smp1.bam smp2.bam smp3.bam

    Comment


    • #3
      thanks for a swift reply!

      Comment


      • #4
        genomeCoverageBed from bedtools will also do it.

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