Viral RNA sequence library

[danielsbrewer]

Hi,

I have got some Solexa data from cancer tissue mRNA (looking at length mRNA only) and I am interesting in looking at whether there is viral RNA within the reads. DOes anyone know whether there is a suitable library/database for this?

Dan

[Torst]

Dan,

I am interesting in looking at whether there is viral RNA within the reads. DOes anyone know whether there is a suitable library/database for this?

A starting point, containing all completed virus sequences, is here:

ftp://ftp.ncbi.nih.gov/genomes/Viruses/

--Torsten