Viral RNA sequence library

danielsbrewer

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Join Date: Feb 2009

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#1

Viral RNA sequence library

06-02-2009, 02:14 AM

Hi,

I have got some Solexa data from cancer tissue mRNA (looking at length mRNA only) and I am interesting in looking at whether there is viral RNA within the reads. DOes anyone know whether there is a suitable library/database for this?

Dan
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Torst

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Join Date: Apr 2008

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#2

06-02-2009, 07:02 PM

Dan,

Originally posted by danielsbrewer View Post

I am interesting in looking at whether there is viral RNA within the reads. DOes anyone know whether there is a suitable library/database for this?

A starting point, containing all completed virus sequences, is here:

ftp://ftp.ncbi.nih.gov/genomes/Viruses/

--Torsten
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