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  • kasthuri
    Member
    • Jun 2011
    • 36

    #1

    Whole exomes from whole genome

    How do I extract whole exomes from whole genome data? I have a bunch of whole exomes and I just need the exomic part.

    Thanks
    -Kasthuri
  • swbarnes2
    Senior Member
    • May 2008
    • 910

    #2
    Get a .bed files with exonic locations, and use intersectBed in BEDTools to get only the .bam entries that overlap the exons.

    I'm just not sure sure where such a .bed is available for easy download.

    Comment

    • kasthuri
      Member
      • Jun 2011
      • 36

      #3
      Thank you swbarnes2. This is great!

      Comment

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