problem with CEAS

[maria_mari]

Hi everybody,
I installed CEAS according to its installation steps (http://liulab.dfci.harvard.edu/CEAS/install.html)

$ tar xvf CEAS-Package-1.0.2.tar.gz
$ cd CEAS-Package-1.0.2.tar.gz

I don't have access to /usr/local/bin; So, I installed CEAS at my home directory as follows.

$ python setup.py install --prefix=/home/maria

then I added the following line to .bash_profile

export $PYTHONPATH=$PYTHONPATH:/home/maria/lib64/python6.2/site-packages


====================
but it give me back these error:

$ cd CEAS-Package-1.0.2/bin
~ CEAS-Package-1.0.2/bin $ ls
build_genomeBG ceas gca sitepro
~ CEAS-Package-1.0.2/bin $ ./build_genomeBG

Traceback (most recent call last):
File "./build_genomeBG", line 25, in <module>
import CEAS.inout as inout
ImportError: No module named CEAS.inout

[ETHANol]

I could never get it to run but you don't have too many files to analyze you can use it on a Galaxy platform here:

http://cistrome.org/

[maria_mari]

does somebody know how I can fix this error:

Traceback (most recent call last):
File "/usr/local/bin/ceas", line 1343, in <module>
main()
File "/usr/local/bin/ceas", line 707, in main
breaks = profiles['breaks']
UnboundLocalError: local variable 'profiles' referenced before assignment


attached please find ceas!

thank you so much

[wisense]

Hi everybody,
I installed CEAS according to its installation steps (http://liulab.dfci.harvard.edu/CEAS/install.html)

$ tar xvf CEAS-Package-1.0.2.tar.gz
$ cd CEAS-Package-1.0.2.tar.gz

I don't have access to /usr/local/bin; So, I installed CEAS at my home directory as follows.

$ python setup.py install --prefix=/home/maria

then I added the following line to .bash_profile

export $PYTHONPATH=$PYTHONPATH:/home/maria/lib64/python6.2/site-packages


====================
but it give me back these error:

$ cd CEAS-Package-1.0.2/bin
~ CEAS-Package-1.0.2/bin $ ls
build_genomeBG ceas gca sitepro
~ CEAS-Package-1.0.2/bin $ ./build_genomeBG

Traceback (most recent call last):
File "./build_genomeBG", line 25, in <module>
import CEAS.inout as inout
ImportError: No module named CEAS.inout

Hi, maria,
Please remove the "$" in front of the first "PYTHON", and try it again. In my linux system, "export $PYTHONPATH=$PYTHONPATH:" is an invalid syntax. The correct form is "export PYTHONPATH=$PYTHONPATH:"