Hi, everyone,
I'm totally new to RNA-seq. I have collaborated with other lab to sequence one Chip-seq library. Now I have some half-analyzed tags data in excel file
the column title like this, totally about 1000 rows:
Chr CenterMeter SummedHeight ChrStart ChrEnd.
I'm wondering how I start from these data to generate the genomic feature of these tags?
1 how to translate xls files to bed or other files?
2 how I can start from the tags chromosomal location files to get while tags genomic features distribution, like Transcription units, CpG islands, repeats, et.al.
I can use a lot bit of R language not a expert.
Thanks a lot for your help!
I'm totally new to RNA-seq. I have collaborated with other lab to sequence one Chip-seq library. Now I have some half-analyzed tags data in excel file
the column title like this, totally about 1000 rows:
Chr CenterMeter SummedHeight ChrStart ChrEnd.
I'm wondering how I start from these data to generate the genomic feature of these tags?
1 how to translate xls files to bed or other files?
2 how I can start from the tags chromosomal location files to get while tags genomic features distribution, like Transcription units, CpG islands, repeats, et.al.
I can use a lot bit of R language not a expert.
Thanks a lot for your help!
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